abm_shape_collection

Collection of tasks for analyzing cell shapes.

calculate_feature_statistics	Perform two-sample Kolmogorov-Smirnov test for goodness of fit on features.
calculate_shape_statistics	Perform two-sample Kolmogorov-Smirnov test for goodness of fit on shapes.
construct_mesh_from_array	Construct a mesh from binary image array.
construct_mesh_from_coeffs	Construct a mesh from spherical harmonic coefficients.
construct_mesh_from_points	Construct mesh given PCA transformation points.
extract_mesh_projections	Extract slices and/or extents from mesh.
extract_mesh_wireframe	Extract wireframe edges from mesh.
extract_shape_modes	Extract shape modes (latent walks in PC space) at the specified intervals.
extract_voxel_contours	Extract contours from list of voxels in specified projection direction.
fit_pca_model	Fit PCA model to given data.
get_shape_coefficients	Calculate spherical harmonic coefficients for binary image array.
get_shape_properties	Calculate shape properties for binary image array.
make_voxels_array	Convert list of voxels to a binary image array.