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Cell ABM Pipeline
0.0.0
Cell ABM Pipeline
0.0.0

API reference

  • flows
    • analyze_basic_metrics
    • analyze_cell_shapes
    • analyze_colony_dynamics
    • calculate_coefficients
    • calculate_image_properties
    • calculate_neighbors
    • calculate_positions
    • calculate_properties
    • convert_arcade_format
    • convert_physicell_format
    • demo
    • download_images
    • generate_voronoi_tessellation
    • group_basic_metrics
    • group_cell_shapes
    • group_colony_dynamics
    • group_resource_usage
    • initialize_arcade_simulations
    • initialize_physicell_simulations
    • make_simulation_movies
    • organize_calculation_files
    • parse_arcade_simulations
    • parse_physicell_simulations
    • plot_basic_metrics
    • plot_cell_shapes
    • plot_colony_dynamics
    • plot_resource_usage
    • process_sample
    • run_batch_simulations
    • run_docker_simulations
    • run_fargate_calculations
    • sample_image
    • summarize_manifest
  • tasks
    • bin_to_hex
    • build_svg_image
    • calculate_category_durations
    • calculate_data_bins
    • check_data_bounds
    • make_bar_figure
    • make_box_figure
    • make_centroids_figure
    • make_contour_figure
    • make_density_figure
    • make_graph_figure
    • make_heatmap_figure
    • make_histogram_figure
    • make_line_figure
    • make_range_figure
    • make_scatter_figure
    • physicell

Project links

  • GitHub
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