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ABM Initialization Collection
0.7.0
ABM Initialization Collection
0.7.0

Module reference

  • abm_initialization_collection.coordinate
    • filter_coordinate_bounds
    • make_grid_coordinates
  • abm_initialization_collection.image
    • create_voronoi_image
    • get_image_bounds
    • plot_contact_sheet
    • select_fov_images
  • abm_initialization_collection.sample
    • exclude_selected_ids
    • get_image_samples
    • get_sample_indices
    • include_selected_ids
    • remove_edge_regions
    • remove_unconnected_regions
    • scale_sample_coordinates

Development

  • Changelog

Project links

  • GitHub
  • PyPI
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abm_initialization_collection.image#

Tasks for initialization from images.

image.create_voronoi_image

Apply Voronoi tessellation to image.

image.get_image_bounds

Extract image bounds in the x, y, and z directions.

image.plot_contact_sheet

Plot contact sheet of images for each z slice.

image.select_fov_images

Select FOV images from dataset within each volume bin.

Next
create_voronoi_image
Previous
make_grid_coordinates
Copyright © 2024, Jessica S. Yu, Allen Institute for Cell Science
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